Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_12530Acetylpolyamine aminohydrolase; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein. (339 aa)    
Predicted Functional Partners:
ISM_12535
Oxidoreductase, FAD-binding protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
 
   0.845
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
   
 0.771
ISM_07585
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.757
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
    
 0.726
cobB
COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
    
 0.711
ISM_12525
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.705
ISM_11250
Hypothetical protein; COG0464 ATPases of the AAA+ class.
    
 0.693
ISM_17790
COG0464 ATPases of the AAA+ class.
    
 0.693
ISM_10091
Trypsin; COG5640 Secreted trypsin-like serine protease.
    
  0.680
ISM_09411
Hypothetical protein.
    
   0.674
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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