STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12560Transcriptional regulator, IclR family protein; COG1414 Transcriptional regulator. (259 aa)    
Predicted Functional Partners:
ISM_12550
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.899
ISM_12555
TRAP dicarboxylate transporter, DctM subunit, putative; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
  0.852
ISM_12545
TRAP dicarboxylate transporter, DctP subunit, putative; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.795
ISM_03330
Hypothetical protein; COG2049 Allophanate hydrolase subunit 1.
  
    0.570
ISM_03940
Dihydrolipoamide acetyltransferase; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
  
  
  0.542
ISM_03325
Urea amidolyase; COG1984 Allophanate hydrolase subunit 2.
  
    0.536
ISM_14700
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
  0.481
ISM_12565
Flavin-containing monooxygenase FMO; COG2072 Predicted flavoprotein involved in K+ transport.
       0.476
ISM_05020
Sorbitol dehydrogenase, putative; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.440
ISM_12570
Endoribonuclease L-PSP family protein; COG0251 Putative translation initiation inhibitor, yjgF family.
       0.438
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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