STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12680COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (654 aa)    
Predicted Functional Partners:
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
  
 0.999
ISM_01450
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.984
ISM_01455
COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.964
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 0.952
ISM_15335
Glutamine amidotransferase-like protein; COG0067 Glutamate synthase domain 1.
  
 0.928
ISM_15340
GXGXG motif-containing protein; COG0070 Glutamate synthase domain 3.
  
 0.928
ISM_16940
FwdC/FmdC family protein; COG0070 Glutamate synthase domain 3.
  
 0.928
ISM_16945
Glutamine amidotransferase, class II; COG0067 Glutamate synthase domain 1.
  
 0.928
ISM_07105
Iron-sulfur cluster-binding protein; COG0633 Ferredoxin.
   
 0.921
ISM_07475
COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  
 0.920
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.