Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_12680COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (654 aa)    
Predicted Functional Partners:
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
  
 0.999
ISM_06040
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 0.975
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
   
 0.969
ISM_01450
COG2086 Electron transfer flavoprotein, beta subunit.
  
 0.961
ISM_14700
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
   
 0.956
ISM_01455
COG2025 Electron transfer flavoprotein, alpha subunit.
   
 0.945
ISM_15335
Glutamine amidotransferase-like protein; COG0067 Glutamate synthase domain 1.
  
 0.910
ISM_15340
GXGXG motif-containing protein; COG0070 Glutamate synthase domain 3.
  
 0.910
ISM_16940
FwdC/FmdC family protein; COG0070 Glutamate synthase domain 3.
  
 0.910
ISM_16945
Glutamine amidotransferase, class II; COG0067 Glutamate synthase domain 1.
  
 0.910
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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