STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12695Hypothetical protein; COG2271 Sugar phosphate permease. (220 aa)    
Predicted Functional Partners:
ISM_12685
Integrase/recombinase; COG0582 Integrase.
 
  
 0.840
ISM_12690
Hypothetical protein.
       0.773
ISM_12700
Hypothetical protein.
       0.773
ISM_12775
Putative phage-related protein.
 
    0.724
ISM_12755
Hypothetical protein; COG3747 Phage terminase, small subunit.
 
    0.714
ISM_12750
Hypothetical protein; COG1403 Restriction endonuclease.
 
  
 0.685
ISM_12795
Hypothetical protein.
 
     0.679
ISM_12765
COG4695 Phage-related protein.
 
  
 0.658
ISM_12760
COG4626 Phage terminase-like protein, large subunit.
 
     0.591
mnmE
tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
    
 
 0.518
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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