Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12785Hypothetical protein. (188 aa)    
Predicted Functional Partners:
ISM_12795
Hypothetical protein.
 
     0.933
ISM_12775
Putative phage-related protein.
 
    0.886
ISM_12755
Hypothetical protein; COG3747 Phage terminase, small subunit.
 
     0.821
ISM_12750
Hypothetical protein; COG1403 Restriction endonuclease.
 
     0.806
ISM_12770
COG0616 Periplasmic serine proteases (ClpP class).
 
    0.801
ISM_12765
COG4695 Phage-related protein.
 
     0.795
ISM_12790
Hypothetical protein.
       0.788
ISM_12800
Hypothetical protein.
       0.788
ISM_12805
Hypothetical protein.
       0.773
ISM_12760
COG4626 Phage terminase-like protein, large subunit.
 
     0.770
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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