Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12925Hypothetical protein. (97 aa)    
Predicted Functional Partners:
ISM_12920
COG0460 Homoserine dehydrogenase.
       0.667
ISM_17195
Hypothetical protein.
  
     0.597
ISM_12930
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.594
ISM_16460
Hypothetical protein.
  
     0.584
ISM_16455
Hypothetical protein.
  
     0.533
ISM_15245
Hypothetical protein; COG0466 ATP-dependent Lon protease, bacterial type.
  
     0.489
ISM_15255
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.468
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.457
ISM_13995
COG0477 Permeases of the major facilitator superfamily.
  
     0.449
ISM_00700
COG1538 Outer membrane protein.
  
     0.444
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.