STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12925Hypothetical protein. (97 aa)    
Predicted Functional Partners:
ISM_12920
COG0460 Homoserine dehydrogenase.
       0.653
ISM_17195
Hypothetical protein.
  
     0.597
ISM_12930
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.589
ISM_16460
Hypothetical protein.
  
     0.584
ISM_16455
Hypothetical protein.
  
     0.533
ISM_15245
Hypothetical protein; COG0466 ATP-dependent Lon protease, bacterial type.
  
     0.489
ISM_12915
Fructose-1,6-bisphosphatase, class II; COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins.
       0.473
ISM_15255
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.468
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.457
ISM_13995
COG0477 Permeases of the major facilitator superfamily.
  
     0.449
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.