STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_12950Hypothetical protein. (188 aa)    
Predicted Functional Partners:
ISM_12960
COG4961 Flp pilus assembly protein TadG.
 
    0.989
ISM_03210
Type II/IV secretion system protein, TadC subfamily protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.975
ISM_12955
Hypothetical protein.
 
    0.972
ISM_03215
Type II/IV secretion system protein, TadC subfamily protein; COG2064 Flp pilus assembly protein TadC.
 
    0.966
ISM_10161
Anti-sigma B factor, putative; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
   
    0.940
ISM_03185
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.876
ISM_06630
COG2198 FOG: HPt domain.
  
    0.872
ISM_03235
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
 
    0.861
ISM_03200
ATPase, putative; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
  
 0.837
ISM_03230
Membrane protein, putative.
 
  
 0.793
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.