Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_13100TRAP transporter, transmembrane protein, putative. (177 aa)    
Predicted Functional Partners:
ISM_13110
Hypothetical protein.
 
    0.954
ISM_13105
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
  0.940
ISM_13095
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.938
ISM_13115
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.900
ISM_13090
Hypothetical protein; Belongs to the D-glutamate cyclase family.
 
     0.867
ISM_13120
Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family.
 
     0.714
ISM_15150
Hypothetical protein.
  
  
 
0.649
ISM_10975
Hypothetical protein.
     
  0.541
ISM_15155
Bacterial extracellular solute-binding protein, family 7 protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.502
ISM_03905
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.492
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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