STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13145TPR repeat family protein. (88 aa)    
Predicted Functional Partners:
ISM_04990
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.984
ISM_13140
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
       0.853
ISM_13150
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
 
     0.748
ISM_13135
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.703
ISM_13130
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.593
ISM_16800
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.526
ISM_06675
Phosphate acetyltransferase; COG0281 Malic enzyme.
    
  0.519
ISM_09586
Malate dehydrogenase; COG0281 Malic enzyme.
    
  0.519
ISM_09941
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.494
argH
COG0165 Argininosuccinate lyase.
  
  
  0.485
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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