STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13150Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (170 aa)    
Predicted Functional Partners:
ISM_03140
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
   
    0.781
ISM_13145
TPR repeat family protein.
 
     0.748
ISM_06565
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.702
ISM_13140
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
       0.657
ISM_12050
Diguanylate cyclase, putative; COG2199 FOG: GGDEF domain.
   
    0.639
ISM_10616
Hypothetical protein.
  
     0.615
ISM_11520
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
   
    0.606
ISM_08010
Hypothetical protein.
  
     0.602
ISM_10006
Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
  
    0.554
ISM_11710
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.540
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.