STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13290COG2188 Transcriptional regulators. (245 aa)    
Predicted Functional Partners:
ISM_13285
Probable hydrolase transmembrane protein; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.733
ISM_13300
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.699
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.693
ISM_13305
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
       0.693
ISM_10995
Transcriptional regulator, DeoR family protein; COG1349 Transcriptional regulators of sugar metabolism.
  
   
 0.533
ISM_04305
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.522
ISM_07755
COG1609 Transcriptional regulators.
  
   
 0.509
ISM_08560
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
   
 0.497
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
  
 0.496
ISM_12675
COG1396 Predicted transcriptional regulators.
  
  
 0.496
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.