Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_13295COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (325 aa)    
Predicted Functional Partners:
ISM_13305
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
    0.952
ISM_13320
TRAP-T family transporter, fused small and large inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
     
  0.900
ISM_13300
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.835
ISM_05780
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.801
ISM_03875
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.796
ISM_03725
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.793
ISM_02995
Putative integral membrane protein, possible transporter; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.792
ISM_03910
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.789
ISM_12025
Probable DctM (C4-dicarboxylate permease, large subunit); COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.788
ISM_11895
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
    0.778
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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