Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_13305Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (419 aa)    
Predicted Functional Partners:
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
    0.952
ISM_13300
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
   0.865
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.790
ISM_03885
Putative periplasmic substrate-binding transport protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.783
ISM_03880
TRAP transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.770
ISM_03000
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.729
ISM_03715
TRAP dicarboxylate transporter, DctP subunit, putative; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.724
ISM_12035
Probable DctP (periplasmic C4-dicarboxylate binding protein); COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.693
ISM_13290
COG2188 Transcriptional regulators.
       0.693
ISM_11885
C4-dicarboxylate-binding periplasmic protein precursor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.685
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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