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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13325TRAP-T family transporter, periplasmic binding protein; COG3181 Uncharacterized protein conserved in bacteria. (303 aa)    
Predicted Functional Partners:
ISM_13320
TRAP-T family transporter, fused small and large inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.952
ISM_04005
TRAP-T family transporter, large (12 TMs) inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.856
ISM_07510
COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.856
ISM_08295
TRAP-T family transporter, fused small and large inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.856
ISM_12305
TRAP-T family transporter, large (12 TMs) inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.855
ISM_13315
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
  
  
 0.794
ISM_13310
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
       0.678
ISM_13335
Sulfopyruvate decarboxylase subunit alpha; COG4032 Predicted thiamine-pyrophosphate-binding protein.
  
    0.534
ISM_13330
Sulfopyruvate decarboxylase subunit beta; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
       0.531
ISM_04000
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
  
  
 0.526
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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