STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13355Hypothetical protein. (184 aa)    
Predicted Functional Partners:
ISM_13360
Hypothetical protein.
 
  
 0.920
ISM_05705
Lipolytic enzyme, G-D-S-L family protein; COG2755 Lysophospholipase L1 and related esterases.
  
 0.815
ISM_09681
GDSL-like lipase/acylhydrolase, putative; COG2755 Lysophospholipase L1 and related esterases.
  
 0.815
ISM_09826
Peptidoglycan binding domain protein; COG2951 Membrane-bound lytic murein transglycosylase B.
  
   
 0.712
ISM_13350
COG0021 Transketolase; Belongs to the transketolase family.
       0.624
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.605
ISM_16840
Hypothetical protein; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.592
ISM_02095
COG2340 Uncharacterized protein with SCP/PR1 domains.
  
    0.580
ISM_06590
Lipoprotein, putative; COG2340 Uncharacterized protein with SCP/PR1 domains.
  
    0.580
ISM_12150
Hypothetical protein.
  
     0.580
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.