Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_13605ABC transporter, ATP-binding protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (259 aa)    
Predicted Functional Partners:
ISM_13590
Hypothetical protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
 0.995
ISM_13595
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 0.995
ISM_13600
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.993
ISM_02985
Taurine ABC transporter, permease protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.943
ISM_13615
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
     0.915
ISM_02975
COG4521 ABC-type taurine transport system, periplasmic component.
  
 
 0.783
ISM_13610
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
    0.781
ISM_13635
COG0167 Dihydroorotate dehydrogenase.
 
     0.729
ISM_13620
N-carbamoyl-L-amino acid amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
     0.705
ISM_13625
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
 
     0.673
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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