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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13610Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases. (140 aa)    
Predicted Functional Partners:
ISM_13605
ABC transporter, ATP-binding protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
       0.780
ISM_13615
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
       0.773
ISM_09941
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.668
ISM_16800
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.668
ISM_13595
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.629
ISM_13600
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.629
ISM_07350
COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
    
 0.597
ISM_14155
Class II aldolase/adducin N-terminal domain protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
    
 0.520
ISM_11525
methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.
     
 0.519
ISM_16740
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
     
 0.514
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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