Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_13645Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators. (254 aa)    
Predicted Functional Partners:
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
  
 0.660
ISM_03340
COG1802 Transcriptional regulators.
  
  
 0.594
ISM_13650
Hypothetical protein.
       0.584
ISM_13655
Hypothetical protein.
       0.584
ISM_08245
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.573
ISM_06335
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.514
ISM_10296
COG1802 Transcriptional regulators.
  
  
 0.474
ISM_07870
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.464
ISM_13640
Pyridine nucleotide-disulphide oxidoreductase family protein; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
     
 0.452
ISM_13635
COG0167 Dihydroorotate dehydrogenase.
       0.450
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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