Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_13670COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (159 aa)    
Predicted Functional Partners:
ISM_13665
Hypothetical protein.
       0.773
smc
SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
     
 0.503
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
    
 0.429
ISM_12675
COG1396 Predicted transcriptional regulators.
    
 0.429
ISM_00550
Putative acetyltransferase, GNAT family protein; COG1247 Sortase and related acyltransferases.
 
  
 0.409
ISM_11785
L-threonine aldolase, low-specificity, putative; COG2008 Threonine aldolase.
 
  
  0.407
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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