STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13710Hypothetical protein. (116 aa)    
Predicted Functional Partners:
ISM_13705
Hypothetical protein; COG0435 Predicted glutathione S-transferase.
       0.562
ISM_08360
Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.519
ISM_13270
SlyX protein, putative; COG2900 Uncharacterized protein conserved in bacteria.
  
     0.511
ISM_16675
Hypothetical protein.
  
     0.507
ISM_09436
Hypothetical protein.
  
     0.501
ISM_16150
Hypothetical protein.
  
     0.480
ISM_09571
Hypothetical protein.
  
     0.455
ISM_08365
Hypothetical protein.
  
     0.443
ISM_10211
Hypothetical protein.
  
     0.437
ISM_02895
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
  
     0.431
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.