STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_13880Hypothetical protein. (116 aa)    
Predicted Functional Partners:
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.853
ISM_05580
Hypothetical protein.
  
     0.757
ISM_02780
Hypothetical protein.
  
     0.738
ISM_06085
Helicase, ATP-dependent, putative; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.730
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.715
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.676
ISM_10066
COG3255 Putative sterol carrier protein.
  
     0.664
ISM_09601
Hypothetical protein.
  
     0.659
ISM_13890
Putative aromatic pathway regulator; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.636
ISM_15175
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.626
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.