Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_13890Putative aromatic pathway regulator; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (148 aa)    
Predicted Functional Partners:
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.822
ISM_13880
Hypothetical protein.
       0.663
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.660
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
    
 0.429
ISM_12675
COG1396 Predicted transcriptional regulators.
    
 0.429
ISM_13870
Integration host factor beta subunit.
       0.409
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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