Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_14035Phasin, PhaP. (140 aa)    
Predicted Functional Partners:
ISM_14040
COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.844
ISM_14025
Hypothetical protein; COG4553 Poly-beta-hydroxyalkanoate depolymerase.
 
   
 0.793
ISM_14030
COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.782
ISM_09826
Peptidoglycan binding domain protein; COG2951 Membrane-bound lytic murein transglycosylase B.
  
     0.766
ISM_15965
Hypothetical protein; COG0591 Na+/proline symporter.
  
     0.761
ISM_14725
Hypothetical protein; COG3926 Putative secretion activating protein.
  
     0.750
ISM_09806
Hypothetical protein.
  
     0.747
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.745
ISM_00200
Hypothetical protein.
  
     0.742
ISM_16045
Hypothetical protein.
  
     0.742
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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