STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_14165High-affinity zinc uptake system membrane protein ZnuB; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components. (267 aa)    
Predicted Functional Partners:
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 0.999
ISM_14180
Zinc ABC transporter, periplasmic zinc-binding protein; COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin.
 
 
 0.994
ISM_05645
Hypothetical protein; COG3443 Predicted periplasmic or secreted protein.
  
 
 0.965
ISM_14175
COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
  
 0.929
ISM_17630
Iron dependent repressor; COG1321 Mn-dependent transcriptional regulator.
  
 
 0.734
ISM_07735
Iron ABC transporter, ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
    
 0.597
ISM_15680
ABC transporter, periplasmic substrate-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
  
  
  0.495
ugpC
Hypothetical protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
    
  0.494
ISM_09451
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
  
  
  0.490
lolD
Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.479
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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