Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_14215COG3871 Uncharacterized stress protein (general stress protein 26). (156 aa)    
Predicted Functional Partners:
ISM_09556
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
    0.622
ISM_07130
Proteinase; COG0693 Putative intracellular protease/amidase.
 
    0.564
ISM_14220
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.547
ISM_01535
Ribonuclease BN; COG1295 Predicted membrane protein.
 
    0.536
ISM_04040
Hypothetical protein; COG1834 N-Dimethylarginine dimethylaminohydrolase.
   
    0.515
ISM_11925
Oxidoreductase, aldo/keto reductase family protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
   
 
  0.465
pdxH
Pyridoxamine 5''-phosphate oxidase, putative; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
 0.455
ISM_10651
COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
     
  0.423
ISM_14225
Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.
  
    0.413
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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