Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_14450COG3807 Uncharacterized protein conserved in bacteria. (167 aa)    
Predicted Functional Partners:
ISM_12425
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.694
ISM_06785
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.627
ISM_00345
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.591
ISM_12070
COG3820 Uncharacterized protein conserved in bacteria.
  
     0.587
ISM_01175
COG3750 Uncharacterized protein conserved in bacteria.
  
     0.574
ISM_14455
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.567
rpsU
COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.544
ISM_11100
COG2960 Uncharacterized protein conserved in bacteria.
  
     0.535
ISM_14460
Gamma-glutamyltranspeptidase; COG0405 Gamma-glutamyltransferase.
       0.515
ISM_16020
Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.
  
     0.508
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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