STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_14670Hypothetical protein; COG0059 Ketol-acid reductoisomerase. (136 aa)    
Predicted Functional Partners:
ISM_14665
Agmatinase; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
       0.707
ISM_14655
COG1694 Predicted pyrophosphatase.
       0.521
ISM_14660
Amidohydrolase family protein; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.497
ISM_06845
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
     0.486
ISM_11140
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.481
ISM_03225
Lipoprotein, putative; COG0457 FOG: TPR repeat.
  
     0.438
ISM_12945
Hypothetical protein.
  
     0.418
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
       0.416
ISM_06630
COG2198 FOG: HPt domain.
  
     0.416
ISM_15780
Hypothetical protein.
  
     0.409
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.