Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_14880Xanthine dehydrogenase family protein, medium subunit; COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs. (285 aa)    
Predicted Functional Partners:
ISM_14885
Xanthine dehydrogenase family protein, small/large subunits; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
 0.999
ISM_14485
COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
 0.996
ISM_14480
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 0.979
ISM_15765
XdhC/CoxI family protein; COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
 
 0.925
ISM_14890
Hypothetical protein; COG1180 Pyruvate-formate lyase-activating enzyme.
 
     0.897
ISM_14895
Hypothetical protein.
 
     0.894
ISM_14900
Hypothetical protein.
 
     0.862
ISM_14905
Hypothetical protein.
 
     0.858
ISM_04465
Probable guanine deaminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
 
  0.790
ISM_14565
Hypothetical protein; COG2068 Uncharacterized MobA-related protein.
 
  
 0.677
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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