STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_14910Probable ferredoxin--NADP reductase protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (271 aa)    
Predicted Functional Partners:
ISM_00020
Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
    
 0.559
ISM_15735
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
  
 0.509
ISM_14890
Hypothetical protein; COG1180 Pyruvate-formate lyase-activating enzyme.
       0.504
ISM_14895
Hypothetical protein.
       0.502
ISM_14900
Hypothetical protein.
       0.483
ISM_15475
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
  
 
 0.483
ISM_14880
Xanthine dehydrogenase family protein, medium subunit; COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
       0.479
ISM_14885
Xanthine dehydrogenase family protein, small/large subunits; COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
       0.479
ISM_14905
Hypothetical protein.
       0.479
ISM_06105
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
     
 0.474
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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