STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_14950Hypothetical protein. (211 aa)    
Predicted Functional Partners:
ISM_08935
Hypothetical protein.
  
     0.681
ISM_07000
Hypothetical protein.
  
     0.663
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.656
ISM_08940
Hypothetical protein.
  
     0.646
ISM_07040
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
     0.627
ISM_06490
Translocase.
  
     0.614
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.614
ISM_17195
Hypothetical protein.
  
     0.588
ISM_09696
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
  
     0.557
ISM_10206
epsK domain protein.
  
     0.557
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.