Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15145TRAP dicarboxylate family transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (432 aa)    
Predicted Functional Partners:
ISM_15155
Bacterial extracellular solute-binding protein, family 7 protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.987
ISM_15150
Hypothetical protein.
  0.966
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.672
ISM_03880
TRAP transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.660
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.660
ISM_05785
Probable DctMQ fusion protein (C4-dicarboxylate transporter); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.628
ISM_03905
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.615
ISM_03005
TRAP dicarboxylate transporter, DctM subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.578
ISM_03885
Putative periplasmic substrate-binding transport protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.560
ISM_10975
Hypothetical protein.
  
  0.551
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.