STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15145TRAP dicarboxylate family transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (432 aa)    
Predicted Functional Partners:
ISM_15155
Bacterial extracellular solute-binding protein, family 7 protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
  0.987
ISM_15150
Hypothetical protein.
  0.970
ISM_05785
Probable DctMQ fusion protein (C4-dicarboxylate transporter); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.708
ISM_03880
TRAP transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.706
ISM_03905
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.697
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.670
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.658
ISM_03005
TRAP dicarboxylate transporter, DctM subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.634
ISM_04320
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.628
ISM_10975
Hypothetical protein.
  
  0.628
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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