Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_15150Hypothetical protein. (175 aa)    
Predicted Functional Partners:
ISM_15145
TRAP dicarboxylate family transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  0.966
ISM_15155
Bacterial extracellular solute-binding protein, family 7 protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.900
ISM_10975
Hypothetical protein.
  
  
  0.772
ISM_11440
TRAP-T family transporter, DctQ (4TMs) subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.771
ISM_13105
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.669
ISM_13095
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.649
ISM_13100
TRAP transporter, transmembrane protein, putative.
  
  
 
0.649
ISM_03905
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.615
ISM_05785
Probable DctMQ fusion protein (C4-dicarboxylate transporter); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.615
ISM_15295
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.613
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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