Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15255DNA-binding protein, putative; COG1396 Predicted transcriptional regulators. (278 aa)    
Predicted Functional Partners:
ISM_15260
Hypothetical protein; COG3386 Gluconolactonase.
 
     0.888
ISM_16455
Hypothetical protein.
  
     0.774
ISM_17195
Hypothetical protein.
  
     0.723
ISM_16460
Hypothetical protein.
  
     0.698
ISM_14335
Hypothetical protein.
  
     0.689
ISM_16450
Membrane protein, putative; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.606
ISM_01875
Hypothetical protein.
  
     0.593
ISM_13740
COG2261 Predicted membrane protein.
  
     0.576
ISM_11840
Hypothetical protein.
  
  
  0.530
ISM_02355
Hypothetical protein.
  
     0.523
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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