STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15290Bacterial extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (360 aa)    
Predicted Functional Partners:
ISM_15300
TRAP transporter, DctM subunit, putative; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.882
ISM_15295
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.787
ISM_04380
Hypothetical permease protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.775
ISM_07255
Hypothetical permease component of C4 dicarboxylate transporter; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.775
ISM_04385
COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.774
ISM_07250
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.774
ISM_06645
TRAP-T family transporter, small (4 TMs) inner membrane subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.760
ISM_06650
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.760
ISM_10301
TRAP transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.747
ISM_15285
COG4564 Signal transduction histidine kinase.
 
     0.573
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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