STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15305Hypothetical protein; COG0662 Mannose-6-phosphate isomerase. (112 aa)    
Predicted Functional Partners:
ISM_03530
Putative UDP-galactose phosphate transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.519
ISM_01465
Hypothetical protein.
    
  0.479
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
 0.458
ISM_12675
COG1396 Predicted transcriptional regulators.
  
 0.458
ISM_07410
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.451
ISM_04070
Hypothetical protein; COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
  0.441
ISM_14075
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
  0.441
ISM_14090
Hypothetical protein.
  
  0.441
ISM_06910
Exopolysaccharide production protein exoY; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.411
ISM_16685
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.411
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.