STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15325Regulator for uxu operon; COG2186 Transcriptional regulators. (224 aa)    
Predicted Functional Partners:
ISM_03985
Transcriptional regulatory protein; COG1802 Transcriptional regulators.
  
  
 0.615
ISM_08245
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.582
ISM_03340
COG1802 Transcriptional regulators.
  
  
 0.563
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
  
 0.556
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.541
ISM_06335
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.500
ISM_13290
COG2188 Transcriptional regulators.
  
    0.471
ISM_07870
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.454
ISM_06265
Transcriptional regulator, GntR family protein; COG2188 Transcriptional regulators.
  
    0.433
ISM_08000
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.417
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.