Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15325Regulator for uxu operon; COG2186 Transcriptional regulators. (224 aa)    
Predicted Functional Partners:
ISM_03985
Transcriptional regulatory protein; COG1802 Transcriptional regulators.
  
  
 0.618
ISM_08245
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.585
ISM_03340
COG1802 Transcriptional regulators.
  
  
 0.567
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
  
 0.559
ISM_06335
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.504
ISM_13290
COG2188 Transcriptional regulators.
  
    0.466
ISM_07870
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.458
ISM_06265
Transcriptional regulator, GntR family protein; COG2188 Transcriptional regulators.
  
    0.428
ISM_08000
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.422
ISM_14445
COG1414 Transcriptional regulator.
  
  
 0.411
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.