Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ISM_15565Hypothetical protein. (257 aa)    
Predicted Functional Partners:
ISM_06845
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
    0.822
ISM_06630
COG2198 FOG: HPt domain.
  
    0.683
ISM_15570
yicC family protein; COG1561 Uncharacterized stress-induced protein.
       0.629
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.629
ISM_10161
Anti-sigma B factor, putative; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
    0.591
ISM_15585
Phosphate regulon sensor histidine kinase, putative; COG0642 Signal transduction histidine kinase.
       0.576
ISM_09906
Glycosyl transferase, group 2 family protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
    0.547
ISM_15580
Predicted ferripyochelin binding protein; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
       0.528
ISM_05860
Flagellar hook-length control protein.
  
    0.517
ISM_11520
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.511
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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