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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15670Phospholipase, patatin-like family protein; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (341 aa)    
Predicted Functional Partners:
ISM_15675
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
  0.777
ISM_14030
COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.679
ISM_07555
TRAG protein; COG3505 Type IV secretory pathway, VirD4 components.
    
   0.678
ISM_17295
Hypothetical protein.
    
   0.678
ISM_17825
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
    
   0.678
ISM_05840
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
  
 0.577
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
  
 
 0.554
ISM_11875
Lipase, putative; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
    
 0.551
ISM_00045
Hydrolase, alpha/beta fold family protein; COG2267 Lysophospholipase.
     
 0.537
ISM_14040
COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.530
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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