STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_15980Hypothetical protein; COG4122 Predicted O-methyltransferase. (200 aa)    
Predicted Functional Partners:
ISM_15985
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.787
ISM_15970
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.768
ISM_15975
FeS assembly ATPase SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
       0.768
ISM_16005
FeS assembly protein SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.683
ISM_15965
Hypothetical protein; COG0591 Na+/proline symporter.
 
     0.679
ISM_16010
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
       0.648
ISM_15995
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.633
ISM_15990
Hypothetical protein.
       0.613
ISM_15960
Hypothetical protein.
       0.606
pheT
phenylalanyl-tRNA synthetase beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.595
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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