STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16025Hypothetical protein. (86 aa)    
Predicted Functional Partners:
ISM_16020
Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.
       0.853
ISM_16015
Iron-sulfur cluster assembly transcription factor IscR, putative; COG1959 Predicted transcriptional regulator.
       0.672
ISM_03460
Hypothetical protein.
  
     0.649
ISM_15965
Hypothetical protein; COG0591 Na+/proline symporter.
 
     0.541
ISM_00305
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.538
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.518
ISM_00610
Hypothetical protein.
  
     0.517
ISM_16010
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
       0.503
ISM_13740
COG2261 Predicted membrane protein.
  
     0.499
ISM_12440
Lipoprotein, putative.
  
     0.492
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.