Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16185Invasion associated family protein. (224 aa)    
Predicted Functional Partners:
ISM_16540
RDD family protein; COG1714 Predicted membrane protein/domain.
  
     0.675
ISM_09806
Hypothetical protein.
  
     0.641
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.618
ISM_16425
Hypothetical protein.
  
     0.593
ISM_08515
COG3768 Predicted membrane protein.
  
     0.575
ISM_15050
COG2825 Outer membrane protein.
  
     0.566
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
   
 0.560
ISM_14035
Phasin, PhaP.
  
     0.559
ISM_05940
Hypothetical protein.
  
     0.549
ISM_14590
Hypothetical protein.
 
    0.525
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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