Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ISM_16355 | rplC | ISM_16355 | ISM_01840 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.918 |
| ISM_16355 | rplD | ISM_16355 | ISM_01830 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.924 |
| ISM_16355 | rplM | ISM_16355 | ISM_16295 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.919 |
| ISM_16355 | rplP | ISM_16355 | ISM_01795 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.915 |
| ISM_16355 | rplR | ISM_16355 | ISM_01720 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.915 |
| ISM_16355 | rplU | ISM_16355 | ISM_16140 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.919 |
| ISM_16355 | rpmF | ISM_16355 | ISM_16375 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.929 |
| ISM_16355 | rpoC | ISM_16355 | ISM_01890 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.916 |
| ISM_16355 | rpsC | ISM_16355 | ISM_01805 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.918 |
| ISM_16355 | rpsO | ISM_16355 | ISM_06390 | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.918 |
| rplC | ISM_16355 | ISM_01840 | ISM_16355 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 0.918 |
| rplC | rplD | ISM_01840 | ISM_01830 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplM | ISM_01840 | ISM_16295 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplP | ISM_01840 | ISM_01795 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
| rplC | rplR | ISM_01840 | ISM_01720 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplC | rplU | ISM_01840 | ISM_16140 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
| rplC | rpmF | ISM_01840 | ISM_16375 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.994 |
| rplC | rpoC | ISM_01840 | ISM_01890 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rplC | rpsC | ISM_01840 | ISM_01805 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplC | rpsO | ISM_01840 | ISM_06390 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
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