STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16685COG2148 Sugar transferases involved in lipopolysaccharide synthesis. (227 aa)    
Predicted Functional Partners:
ISM_07410
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.951
ISM_14135
Mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.947
ISM_16690
Exopolysaccharide biosynthesis domain protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
 
 
 0.848
ISM_16695
Chain length determinant protein, putative; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.724
ISM_05610
COG1086 Predicted nucleoside-diphosphate sugar epimerases.
 
 
 0.704
ISM_04700
Putative function in exopolysaccharide production; COG1596 Periplasmic protein involved in polysaccharide export.
  
 
 0.692
ISM_13040
COG1596 Periplasmic protein involved in polysaccharide export.
  
 
 0.692
gmd
NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.691
ISM_16735
Glycosyl transferase, group 2 family protein; COG1216 Predicted glycosyltransferases.
 
 0.649
ISM_03520
Putative DegT/DnrJ/EryC1/StrS family aminotransferase protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.613
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.