STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16695Chain length determinant protein, putative; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis. (396 aa)    
Predicted Functional Partners:
ISM_16690
Exopolysaccharide biosynthesis domain protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
 
 
 0.949
ISM_04700
Putative function in exopolysaccharide production; COG1596 Periplasmic protein involved in polysaccharide export.
  
 0.887
ISM_13040
COG1596 Periplasmic protein involved in polysaccharide export.
  
 0.887
ISM_16735
Glycosyl transferase, group 2 family protein; COG1216 Predicted glycosyltransferases.
 
  
 0.846
ISM_16745
Membrane protein, putative.
 
  
 0.842
ISM_16750
Glycosyl transferase, WecB/TagA/CpsF family protein; COG1922 Teichoic acid biosynthesis proteins; Belongs to the glycosyltransferase 26 family.
 
  
 0.842
ISM_16730
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
 
   
 0.831
ISM_03530
Putative UDP-galactose phosphate transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.827
ISM_16700
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.825
ISM_04505
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.824
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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