Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16815Hypothetical protein. (154 aa)    
Predicted Functional Partners:
ISM_16810
Hypothetical protein.
       0.773
ISM_16800
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
       0.706
ISM_16805
Hypothetical protein.
       0.670
ISM_00200
Hypothetical protein.
  
     0.596
ISM_02780
Hypothetical protein.
  
     0.571
ISM_05580
Hypothetical protein.
  
     0.513
ISM_16830
Hypothetical protein.
  
     0.512
ISM_16510
Peptidase, M48 family protein; COG0501 Zn-dependent protease with chaperone function.
  
     0.505
ISM_11465
Lipoprotein, putative.
  
     0.496
ISM_05925
OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.475
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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