STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16855DNA-binding protein, putative; COG1396 Predicted transcriptional regulators. (477 aa)    
Predicted Functional Partners:
ISM_16850
Drug resistance transporter, Bcr/CflA family protein; COG0477 Permeases of the major facilitator superfamily.
       0.643
ISM_16845
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
     
 0.621
ISM_07655
COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.604
ISM_07665
HipA protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.604
ISM_16840
Hypothetical protein; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
       0.486
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.461
ISM_16725
COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; Belongs to the P-Pant transferase superfamily.
  
     0.455
ISM_01205
Sensor histidine kinase; COG0591 Na+/proline symporter.
     
 0.435
ISM_14245
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
     
 0.411
ISM_04990
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
 0.403
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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