Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_16975Hypothetical protein; COG0400 Predicted esterase. (402 aa)    
Predicted Functional Partners:
ISM_16970
COG2124 Cytochrome P450.
 
 
  0.929
ISM_13045
COG3562 Capsule polysaccharide export protein.
 
     0.774
ISM_07010
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
   0.770
ISM_07015
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
   0.769
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.766
ISM_10211
Hypothetical protein.
  
     0.761
ISM_04520
Hypothetical protein.
  
     0.760
ISM_07000
Hypothetical protein.
  
     0.759
ISM_14410
Hypothetical protein.
  
     0.757
ISM_06045
Hypothetical protein.
  
     0.756
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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