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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17070Hypothetical protein. (165 aa)    
Predicted Functional Partners:
ISM_17075
Putative nitrate/nitrite response regulator protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.816
ISM_17085
Hypothetical protein.
 
     0.788
ISM_17090
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
  
     0.752
ISM_17095
Putative transport protein; COG0845 Membrane-fusion protein.
  
     0.702
ISM_03410
Cellulose synthase-like protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.663
ISM_03415
COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
     0.627
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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