Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17295Hypothetical protein. (127 aa)    
Predicted Functional Partners:
ISM_17825
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.936
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.903
ISM_17395
Hypothetical protein.
 
     0.810
ISM_17820
T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
   
 0.798
ISM_17405
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
     0.776
ISM_17355
COG3736 Type IV secretory pathway, component VirB8.
 
   
 0.766
ISM_17810
Hypothetical protein.
  
     0.764
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.760
ISM_17400
Hypothetical protein.
 
     0.758
ISM_17775
Hypothetical protein.
 
     0.758
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.