STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_17315Patatin; COG3621 Patatin. (345 aa)    
Predicted Functional Partners:
ISM_17320
Hypothetical protein.
 
     0.954
ISM_17325
Hypothetical protein.
 
     0.954
ISM_17310
Hypothetical protein.
 
     0.909
ISM_17300
Hypothetical protein; COG1855 ATPase (PilT family).
 
     0.874
ISM_17305
COG1396 Predicted transcriptional regulators.
 
     0.867
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
     
 0.471
ISM_17760
Hypothetical protein.
  
     0.451
ISM_09005
COG0584 Glycerophosphoryl diester phosphodiesterase.
     
 0.450
ISM_17475
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
  
     0.433
ISM_01950
Hypothetical protein; COG2124 Cytochrome P450.
  
  
  0.425
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.